.. _variants_cases:

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Variants & Cases
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.. contents::

The variants are assigned to **Cases**.
Use the :guilabel:`Cases` link on the left to see all cases in a project.
Then, click on the case name to go to the case's detail view.

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Case Detail View
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On the case detail view, you can see the following information:

**Details**
    Case detail information such a creation date, case name, and name of individuals.

**Pedigree**
    The full pedigree information with the information whether variants are present for the individuals (i.e., whether it was sequenced).

**Flagged Variants**
    The variants flagged in the individual.

**Comment Variants**
    The variants that were commented in the individual.

**Background Jobs Overview**
    List of background job for this case, e.g., for file export generation.

.. figure:: figures/case_details.png
    :alt: The details view for a case.
    :width: 80%
    :align: center

    The case details view for the demo case.
    Note the details on the different aspects of the case and in particular the :guilabel:`Filter Case` and :guilabel:`ClinVar Report` buttons on the top right.

Case Detail View Actions
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On the top right, you can see the following button:

:guilabel:`Filter Case`
    This takes you to the :ref:`variants_filtration` view.
    Here you can filter the case's variant by a multitude of criteria including genotype, call quality, and variant effect.